BioSANS2020.analysis.plotting.plot_traj

This is the plot_traj module

This module process numeric trajectories and plots them

The following is the list of function for this module:

  1. plot_traj

  2. plot_traj2

Module Contents

Functions

plot_traj(data, slabels, items, plotted, mix_plot=True, logx=False, logy=False, normalize=False, si_ticked=None)

This function plots time series trajectories.

plot_traj2(data, slabels, items, plotted, logx=False, logy=False, normalize=False, xlabel='conc', ylabel='conc', zlabel='conc', trange=None)

This function plots time series trajectories or phase portriat.
BioSANS2020.analysis.plotting.plot_traj.plot_traj(data, slabels, items, plotted, mix_plot=True, logx=False, logy=False, normalize=False, si_ticked=None)

This function plots time series trajectories. Args:

datathree dimensional data. The outermost index represents

the trajectories. Each row of trajectory contains a 2 x 2 numpy array where the rows is the time and the columns are the labels. The first column is time and the next few columns are the trajectories.

slabels : labels of the trajectories in data items : 3 item list of [canvas, scroll_x, scroll_y] plotted : an array where the figures plotted are pushed i.e.

plotted.append([plt.gca(), fig, lines]). This is used for managing the plots in the GUI.

mix_plotif true, the all data will be plotted together in one

plot otherwise in seperate plots

logx : if true, uses logscale in x-axis logy : if true, uses logscale in y-axis normalize : normalized the data based on max(data) si_ticked : list of indexes in slabels to be shown in plot

BioSANS2020.analysis.plotting.plot_traj.plot_traj2(data, slabels, items, plotted, logx=False, logy=False, normalize=False, xlabel='conc', ylabel='conc', zlabel='conc', trange=None)

This function plots time series trajectories or phase portriat. Args:

datathree dimensional data. The outermost index represents

the trajectories. Each row of trajectory contains a 2 x 2 numpy array where the rows is the time and the columns are the labels. The first column is time and the next few columns are the trajectories.

slabels : labels of the trajectories in data items : 3 item list of [canvas, scroll_x, scroll_y] plotted : an array where the figures plotted are pushed i.e.

plotted.append([plt.gca(), fig, lines]). This is used for managing the plots in the GUI.

logx : if true, uses logscale in x-axis logy : if true, uses logscale in y-axis normalize : normalized the data based on max(data) xlabel : label of x-axis ylabel : label of y-axis zlabel : label of y-axis trange : slice indexes of the trajectory i.e. -1000:-1